Mastouille

de.NBI & ELIXIR Germany<a href="https://helmholtz.social/@DKFZ" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@DKFZ</a> is seeking a Postdoctoral Researcher with expertise in <a href="https://mstdn.science/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> and computational analysis to join the Division of Signaling and Functional <a href="https://mstdn.science/tags/Genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Genomics</a> led by Prof. Michael Boutros at the German Cancer Research Center (DKFZ) in Heidelberg, Germany. <a href="https://mstdn.science/tags/PostDoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PostDoc</a> <a href="https://mstdn.science/tags/Jobs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Jobs</a> <a href="https://mstdn.science/tags/Job" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Job</a>. For more information <a href="https://www.denbi.de/de-nbi-jobs-portal/1902-postdoc-bioinformatics-computational-biology" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.denbi.de/de-nbi-jobs-portal/1902-postdoc-bioinformatics-computational-biology</a>

Marc Robinson-RechaviYou can still apply: Postdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm! <a href="https://tinyurl.com/3aewk286" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://tinyurl.com/3aewk286</a> <a href="https://ecoevo.social/tags/EvoDevo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#EvoDevo</a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MolecularEvolution</a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://ecoevo.social/tags/PopulationGenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PopulationGenomics</a> <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RNAseq</a> <a href="https://ecoevo.social/tags/PostDoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PostDoc</a>

Pierre Lindenbauminbox:(...) sept-02 sept-04 sept-06 sept-07 sept-09 sept-12 (...)<a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://genomic.social/tags/donotuseexcel" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#donotuseexcel</a>

ZororgQuickie Introduction!I'm zororg.- <a href="https://fosstodon.org/tags/OnePiece" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#OnePiece</a> fan - <a href="https://fosstodon.org/tags/emacs" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#emacs</a> user, its my personal development environment and more.. - <a href="https://fosstodon.org/tags/orgmode" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#orgmode</a> lets me be organized and have my way - <a href="https://fosstodon.org/tags/Nixos" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Nixos</a> btw, simple config using <a href="https://fosstodon.org/tags/niri" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#niri</a> and styled via <a href="https://fosstodon.org/tags/stylix" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#stylix</a>- Am a postgraduate <a href="https://fosstodon.org/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> student lurking into coding, and integrating AI ML with biological dataTo the techy side, I prefer reading blogs via <a href="https://fosstodon.org/tags/rss" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rss</a> feeds in <a href="https://fosstodon.org/tags/gnus" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#gnus</a> emacs.

Arli A PProud to share these papers! The first, compares logistic regression and convolutional neural network models for predicting anti-TB drug resistance using whole genome sequencing. <a href="https://ejournal.brin.go.id/JBBI/article/view/9769" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://ejournal.brin.go.id/JBBI/article/view/9769</a>The second, explores long COVID risk among hospitalized adults in Palembang, revealing the protective role of full vaccination and identifying key clinical predictors for persistent symptoms. <a href="https://scholarhub.ui.ac.id/kesmas/vol20/iss2/6/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://scholarhub.ui.ac.id/kesmas/vol20/iss2/6/</a><a href="https://sciencemastodon.com/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bioinformatics</a> <a href="https://sciencemastodon.com/tags/MachineLearning" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MachineLearning</a> <a href="https://sciencemastodon.com/tags/Tuberculosis" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Tuberculosis</a> <a href="https://sciencemastodon.com/tags/LongCOVID" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#LongCOVID</a> <a href="https://sciencemastodon.com/tags/PublicHealth" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PublicHealth</a>

jobRxivPostdoctoral Research Scientist Earlham InstituteApplications are invited for a Postdoctoral Research Scientist to join the Research Faculty Department at the Earlham Institute, based in Norwich, UK.See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95918" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95918</a><a href="https://mas.to/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://mas.to/tags/computational_biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computational_biology</a> <a href="https://mas.to/tags/computational_ge" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computational_ge</a>... <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95918" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95918</a>

jobRxivQuadram Early Career Fellowship Quadram Institute BioscienceWe have an exciting opportunity for Early Career Researchers to join a fellowship scheme to help individuals become future leadersSee the full job description on jobRxiv: <a href="https://jobrxiv.org/job/quadram-institute-bioscience-27778-quadram-early-career-fellowship/?feed_id=95862" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/quadram-institute-bioscience-27778-quadram-early-career-fellowship/?feed_id=95862</a><a href="https://mas.to/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://mas.to/tags/genetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#genetics</a> <a href="https://mas.to/tags/gut_microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#gut_microbiome</a> <a href="https://mas.to/tags/micr" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#micr</a>... <a href="https://jobrxiv.org/job/quadram-institute-bioscience-27778-quadram-early-career-fellowship/?feed_id=95862" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/quadram-institute-bioscience-27778-quadram-early-career-fellowship/?feed_id=95862</a>

Tommi MäklinNew preprint: we used k-mer matching with suffix match length information to create an assembly-to-assembly alignment algorithm + software for bacterial genomes, kbo.kbo uses the SBWT data structure which lets us run a query in 1-10s and 500-1000MB RAM, depending on the task and parameters.All our algorithms run in the browser, try the tool at maklin.fi/kbo/ There is no server-side processing, so the data never leaves your computer.link: <a href="https://www.biorxiv.org/content/10.1101/2025.05.19.654936v2" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.biorxiv.org/content/10.1101/2025.05.19.654936v2</a><a href="https://genomic.social/tags/rust" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#rust</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://genomic.social/tags/wasm" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#wasm</a>

Bioinfhotep<a href="https://genomic.social/tags/htslib" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#htslib</a> <a href="https://genomic.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bioinformatics</a> <a href="https://genomic.social/tags/GenomicsIO" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#GenomicsIO</a> <a href="https://genomic.social/@yokofakun" class="u-url mention" rel="nofollow noopener noreferrer" target="_blank">@yokofakun</a> any idea what is the fastest method to get the nth bcf record using htslib or bcftools.h without explicit loops? (trying out something similar to your project <a href="https://github.com/lindenb/rbcf" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/lindenb/rbcf</a> but with ALTREP) I guess it is possible to guess which block to (lazy) parse if one know the blocks offsets and number of records per block

Luke PembletonFantastic tool for quickly visualising read coverage data from bam files across your genome, ohhh and the visualisations are interactive! 🥳 <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://github.com/jonas-fuchs/BAMdash" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/jonas-fuchs/BAMdash</a>

jobRxivQuadram Early Career Fellowship Quadram Institute BioscienceWe have an exciting opportunity for Early Career Researchers to join a fellowship scheme to help individuals become future leadersSee the full job description on jobRxiv: <a href="https://jobrxiv.org/job/quadram-institute-bioscience-27778-quadram-early-career-fellowship/?feed_id=95554" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/quadram-institute-bioscience-27778-quadram-early-career-fellowship/?feed_id=95554</a><a href="https://mas.to/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://mas.to/tags/genetics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#genetics</a> <a href="https://mas.to/tags/gut_microbiome" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#gut_microbiome</a> <a href="https://mas.to/tags/micr" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#micr</a>... <a href="https://jobrxiv.org/job/quadram-institute-bioscience-27778-quadram-early-career-fellowship/?feed_id=95554" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/quadram-institute-bioscience-27778-quadram-early-career-fellowship/?feed_id=95554</a>

Pierre Lindenbaumwhere is the SQL dump for the vista enhancers now ? <a href="https://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/vistaEnhancers.txt.gz" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://hgdownload.cse.ucsc.edu/goldenPath/hg38/database/vistaEnhancers.txt.gz</a> <a href="https://genomic.social/tags/ucsc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ucsc</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

MGClaros<a href="https://mastodon.world/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bioinformatics</a>

Pierre LindenbaumNextflow Summit 2025 Boston , videos, <a href="https://www.youtube.com/playlist?list=PLPZ8WHdZGxmWF9fpFcrUuHiozeUZoLb65" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.youtube.com/playlist?list=PLPZ8WHdZGxmWF9fpFcrUuHiozeUZoLb65</a> <a href="https://genomic.social/tags/nextflow" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#nextflow</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

Pierre Lindenbaumasked regenie: "--ref-first AND pgen files : REF/ALT inversion ?" <a href="https://github.com/rgcgithub/regenie/issues/634" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://github.com/rgcgithub/regenie/issues/634</a> <a href="https://genomic.social/tags/regenie" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#regenie</a> <a href="https://genomic.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a>

Europe Says<a href="https://www.europesays.com/2095746/" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.europesays.com/2095746/</a> Nitte University Centre for Science Education & Research – Empowering Minds with Research-Driven Education <a href="https://pubeurope.com/tags/AdvertorialDisclaimer" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#AdvertorialDisclaimer</a> <a href="https://pubeurope.com/tags/america" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#america</a> <a href="https://pubeurope.com/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bioinformatics</a> <a href="https://pubeurope.com/tags/BiomedicalScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BiomedicalScience</a> <a href="https://pubeurope.com/tags/Biotechnology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biotechnology</a> <a href="https://pubeurope.com/tags/CancerBiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#CancerBiology</a> <a href="https://pubeurope.com/tags/FoodScience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#FoodScience</a>&Technology <a href="https://pubeurope.com/tags/microbiology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#microbiology</a> <a href="https://pubeurope.com/tags/science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#science</a> <a href="https://pubeurope.com/tags/SMPL" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#SMPL</a> <a href="https://pubeurope.com/tags/technology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#technology</a> <a href="https://pubeurope.com/tags/UnitedStates" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#UnitedStates</a> <a href="https://pubeurope.com/tags/UnitedStatesOfAmerica" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#UnitedStatesOfAmerica</a> <a href="https://pubeurope.com/tags/US" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#US</a> <a href="https://pubeurope.com/tags/USA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#USA</a>

jobRxivPostdoctoral Research Scientist Earlham InstituteApplications are invited for a Postdoctoral Research Scientist to join the Research Faculty Department at the Earlham Institute, based in Norwich, UK.See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95456" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95456</a><a href="https://mas.to/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://mas.to/tags/computational_biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computational_biology</a> <a href="https://mas.to/tags/computational_ge" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computational_ge</a>... <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95456" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95456</a>

JaneHarvard researcher Dr. Kseniia Petrova wrote an Op-Ed in the NYT this week about her experience in ICE detention, where she has been living in 1 room with 100 other women for 3 months, and what it means for her research, and our research community more broadly: <a href="https://www.nytimes.com/2025/05/13/opinion/ice-detention-russian-scientist.html?unlocked_article_code=1.HE8.XkID.iSc5Vm8s9DXy&smid=url-share" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.nytimes.com/2025/05/13/opinion/ice-detention-russian-scientist.html?unlocked_article_code=1.HE8.XkID.iSc5Vm8s9DXy&smid=url-share</a>Background on Kseniia's journey to the United States and her jailing by ICE in February: <a href="https://www.nytimes.com/2025/04/11/science/russian-scientist-ice-detained-harvard.html?unlocked_article_code=1.HE8.GpNt.Y_FhDbbuqfb0&smid=url-share" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://www.nytimes.com/2025/04/11/science/russian-scientist-ice-detained-harvard.html?unlocked_article_code=1.HE8.GpNt.Y_FhDbbuqfb0&smid=url-share</a><a href="https://datavis.social/tags/BostonMA" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#BostonMA</a> <a href="https://datavis.social/tags/Biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Biology</a> <a href="https://datavis.social/tags/STEM" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#STEM</a> <a href="https://datavis.social/tags/Bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Bioinformatics</a> <a href="https://datavis.social/tags/Genomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Genomics</a> <a href="https://datavis.social/tags/Science" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#Science</a> <a href="https://datavis.social/tags/USpol" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#USpol</a> <a href="https://datavis.social/tags/ICE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#ICE</a>

Marc Robinson-RechaviPostdoc job opportunity! We're looking for early career researcher in evolutionary genomics to study the relation between intra-specific gene expression variability, polymorphism, and macro-evolutionary rates. We have all of the data in 3 fishes and amphioxus, just waiting for your expertise and enthusiasm! <a href="https://tinyurl.com/3aewk286" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://tinyurl.com/3aewk286</a> <a href="https://ecoevo.social/tags/EvoDevo" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#EvoDevo</a> <a href="https://ecoevo.social/tags/MolecularEvolution" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#MolecularEvolution</a> <a href="https://ecoevo.social/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://ecoevo.social/tags/PopulationGenomics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PopulationGenomics</a> <a href="https://ecoevo.social/tags/RNAseq" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#RNAseq</a> <a href="https://ecoevo.social/tags/PostDoc" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#PostDoc</a>

jobRxivPostdoctoral Research Scientist Earlham InstituteApplications are invited for a Postdoctoral Research Scientist to join the Research Faculty Department at the Earlham Institute, based in Norwich, UK.See the full job description on jobRxiv: <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95244" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95244</a><a href="https://mas.to/tags/bioinformatics" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#bioinformatics</a> <a href="https://mas.to/tags/computational_biology" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computational_biology</a> <a href="https://mas.to/tags/computational_ge" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#computational_ge</a>... <a href="https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95244" rel="nofollow noopener noreferrer" translate="no" target="_blank">https://jobrxiv.org/job/earlham-institute-27778-postdoctoral-research-scientist-7/?feed_id=95244</a>

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